Herramienta web para análisis de Dinámica molecular (DM): Modelo de electroporación de membranas celulares
La simulación computacional de moléculas o estructuras biológicas es una poderosa herramienta que permite modelar aquellos fenómenos producidos en la experimentación de laboratorio. Las simulaciones in silico son un complemento para analizar los resultados obtenidos por otros métodos ya sea porque permiten simular escenarios que por su escala nanométrica son difíciles de analizar en el […]
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Locating Binding Sites in Protein Structures
Paul Labute and Martin SantavyChemical Computing Group Inc.Introduction | Methodology | Results | Summary | References Introduction Active sites in proteins are usually hydrophobic pockets that involve sidechain atoms. It is non-trivial to quantify this rule of thumb. Methods such as [Goodford 1985] or [Miranker 1991] use interaction energies between the receptor and different probes in an […]
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Molecular Dynamics on GPU
GPUs are getting faster and faster every day can we use them to speed up our molecular dynamics simulations let’s find out [Music] hello and welcome to this video on molecular dynamics on GPU Maha dynamic simulations are computationally expensive at least for most systems that we are interested in this makes it very challenging […]