Químico Farmacéutico
This is a 5 minutes introduction to molecular dynamics simulation. Tools to generate initial state for your system: – LAMMPS lattice command: This command creates a 2D or 3D lattice. It supports a number of lattice types.
MDAnalysis documentation¶ Release: 0.19.2 Date: Nov 08, 2018 MDAnalysis (www.mdanalysis.org) is an object-oriented python toolkit to analyze molecular dynamics trajectories generated by CHARMM, Gromacs, Amber, NAMD, LAMMPS, DL_POLY and other packages; it also reads other formats (e.g., PDB files and XYZ format trajectories; see Table of supported coordinate formats and Table of Supported Topology Formats for the full lists). It can write most of these formats, too, together with atom selections […]
Este es un test del uso de CCgenFF con una molecula simple de benceno. Antes se utilizo esta herramienta pero presento problemas, retomare para ver si he pasado por alto algunos detalles que antes desconocia. Lo primero que pide es una molecula en formato .mol2 con todos los hidrogenos agregados, esto lo realice con […]
ver_ http://www.ks.uiuc.edu/Research/gpu/files/siam2019-softnextgenplatforms-stone.pdf