Locating Binding Sites in Protein Structures
Paul Labute and Martin SantavyChemical Computing Group Inc.Introduction | Methodology | Results | Summary | References Introduction Active sites in proteins are usually hydrophobic pockets that involve sidechain atoms. It is non-trivial to quantify this rule of thumb. Methods such as [Goodford 1985] or [Miranker 1991] use interaction energies between the receptor and different probes in an […]
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2AAX with HCY vs 2AA2 with AS4 molecular dynamics
Calculos de strides optimos para los 50.000.000 frames, a los 100 ns. = 4 . Lo que da resultado 2500 frames Alineacion RMSD, desde protein.2AAX with HCY RMSD, desde protein.2AA2 with AS4 Resultados RMSD, desde ligand 2AAX with HCY Resultados RMSD, desde ligand 2AA2 with AS4